rs6343817 SNP Detail

Summary

• ID
  rs6343817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:118013377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGTGCTA GGCAGGCATG
  GTGCACACGG GACCTTACGT AGTGGACAGC AGAGATGGGT ATCCCACATA CTTCGCAGGA
  TGAGTGGAGC CAGGACTAGG CTGAGGGCAG ACAAAAGGGA GCAGAGGAGA GGGGAGAGTG
  AGGATTGGAT TTGAGAATTA TGGGATTCTA ACTACGTAAG ATTTGTACTT CAGAAGTGAA
  Y
  ACAGGAAACA TGTGGCCCAG ACCAGATGGT ATAGGTATTG CCTGGATGGG ACAAAGACCC
  TGAAGAACTA GAAGTCCCTT TGTCCTATCT AATGTGGCTG TAAAGGAAAG AACAAGAAGG
  TAGTAGAGTC ACTAGCAAGT ACCCTCAAAT GAGTGCCAGG TAGGTCCATG CTGTCATTAA
  CTCTCATGTG ACAAAGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8749860	WI_WGS_5_115872208	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6343817					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118013377 () rs orientation: forward

Symbol	Name	Function Class
Gm30360	predicted gene, 30360	within coordinates
Nos1	nitric oxide synthase 1, neuronal	Intron
Rr618744	regulatory region 618744	1200 bp distal