rs6343412 SNP Detail

Summary

• ID
  rs6343412
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:118013342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAATTAT CATTGGACTG
  AGTGTCTTGT TCGTGCTGTG TGCTAGGCAG GCATGGTGCA CACGGGACCT TACGTAGTGG
  ACAGCAGAGA TGGGTATCCC ACATACTTCG CAGGATGAGT GGAGCCAGGA CTAGGCTGAG
  GGCAGACAAA AGGGAGCAGA GGAGAGGGGA GAGTGAGGAT TGGATTTGAG AATTATGGGA
  K
  TCTAACTACG TAAGATTTGT ACTTCAGAAG TGAATACAGG AAACATGTGG CCCAGACCAG
  ATGGTATAGG TATTGCCTGG ATGGGACAAA GACCCTGAAG AACTAGAAGT CCCTTTGTCC
  TATCTAATGT GGCTGTAAAG GAAAGAACAA GAAGGTAGTA GAGTCACTAG CAAGTACCCT
  CAAATGAGTG CCAGGTAGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8749452	WI_WGS_5_115872173	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6343412					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118013342 () rs orientation: forward

Symbol	Name	Function Class
Gm30360	predicted gene, 30360	within coordinates
Nos1	nitric oxide synthase 1, neuronal	Intron
Rr618744	regulatory region 618744	1165 bp distal