rs6343295 SNP Detail

Summary

• ID
  rs6343295
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:67799091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ATTGCATAGC
  TGCATCTGTG ATGTACCTAC CACTTAATGG GTCAGGGCTC CTTCTTTATA CTCTCTGTGC
  TTCAAACTCT ATGTTCACGT AACAGCACTC TGCTCAGCTT CTGAGAATTA AGAGGTTATT
  TTTCAGGATT TTTATCTGAA NTAAACACCA GTGGCTATTC AGAAGAAATG GGAGCTCTGT
  AAGTAAACCT ATGTATTTAT ATGTGTAAAG TGCACTATAA AAAGAAGCAA TAAATCCAGT
  K
  TTCTACATAA AAAGGAATTA GATTTTTCCA GTTTACCTCT GCACTGGGAT TAATGAAACA
  CACAACAAAT AGCTCAGGGA ACAATCCATT TGAAGTTTGT AAAGGCATCT TGGGAAGCTG
  GCTGGAGTAG CCTTTTTGAT ATTTTTCCAA CAAGAATTTC TGTTAATTTT TTTTTATTCG
  CTCCTGAATC CTGAATGGCT GTTTTCCAAT GAGCTCAGCT ATTACCTGCC CATTTCTGCG
  TGGCTGAGCA                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8749333	WI_WGS_3_68489230	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6343295					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67799091 () rs orientation: forward

Symbol	Name	Function Class
Iqcj	IQ motif containing J	462 bp upstream
Iqschfp	Iqcj and Schip1 fusion protein	474 bp upstream
Rr577963	regulatory region 577963	166 bp proximal
Rr577964	regulatory region 577964	485 bp proximal
Tssr29450	transcription start site region 29450	370 bp upstream
Tssr29451	transcription start site region 29451	431 bp upstream