rs6342885 SNP Detail

Summary

• ID
  rs6342885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148453917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC CTGTTGCCAG TTTGGGTAAG
  Y
  CAGCTCTCTG TGCCCAAGTT CACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss8748922	WI_WGS_4_143734885	WI	MOUSE	f	SNP	C		T
ss148004228	ENSMUSSNP5086418	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss321419747	CHEV_4_147743569	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs6342885					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148453917 () rs orientation: forward

Symbol	Name	Function Class
Gm13200	predicted gene 13200	within coordinates
Rr604663	regulatory region 604663	1893 bp proximal