rs6342742 SNP Detail

Summary

• ID
  rs6342742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:67798991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GTGGTTATTG
  TCCTTAAGAA CTTAATTTGC TCAAGATCTT TTCTTACCAT CCTTAATTAT GGATATATTN
  ATGGGTGTGA NCCACCTGCC TGCTCAGGGC ATTGCATAGC TGCATCTGTG ATGTACCTAC
  CACTTAATGG GTCAGGGCTC CTTCTTTATA CTCTCTGTGC TTCAAACTCT ATGTTCACGT
  AACAGCACTC TGCTCAGCTT CTGAGAATTA AGAGGTTATT TTTCAGGATT TTTATCTGAA
  Y
  TAAACACCAG TGGCTATTCA GAAGAAATGG GAGCTCTGTA AGTAAACCTA TGTATTTATA
  TGTGTAAAGT GCACTATAAA AAGAAGCAAT AAATCCAGTN TTCTACATAA AAAGGAATTA
  GATTTTTCCA GTTTACCTCT GCACTGGGAT TAATGAAACA CACAACAAAT AGCTCAGGGA
  ACAATCCATT TGAAGTTTGT AAAGGCATCT TGGGAAGCTG GCTGGAGTAG CCTTTTTGAT
  ATTTTTCCAA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8748779	WI_WGS_3_68489130	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6342742					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67798991 () rs orientation: forward

Symbol	Name	Function Class
Iqcj	IQ motif containing J	562 bp upstream
Iqschfp	Iqcj and Schip1 fusion protein	574 bp upstream
Rr577963	regulatory region 577963	266 bp proximal
Rr577964	regulatory region 577964	585 bp proximal
Tssr29450	transcription start site region 29450	470 bp upstream
Tssr29451	transcription start site region 29451	531 bp upstream