rs6342629 SNP Detail

Summary

• ID
  rs6342629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52152489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGAAAGA AATGTCCTTT
  TGCCTTGTGG GATTTATGTA TAAACTGTAT GTTTATACAT ACCCGTGTGG AAGTCCAGTG
  TGTATGTGTG TTGGGGGAGG GAGGGGAGGA CCAGCTAGGC AGGTCCTTTA GCATACTACC
  AAGACTGGCA TCGAGTTCAC CTAAGTAGGT TCTTAGTAAA GGAAAGCTAC AGAATCTCAA
  Y
  CCCTCTGCCT CCCCAATTCA GTTAAGTCAT ATATATGGCA AGCAAGGGGC CAAACTGGTT
  TTTGTCAGCC AAAGTCAGAA TAATTTTCCA GTGACTAAGC TATCCTCCTC CCTTTGTTGT
  TCTCCCATAC TGCTTTGGTG ATCACCCTGG ATGGCTGAGA GAATGAAAAC ATCAAGAAAT
  GGTTGATTAA GGCCCATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8748665	WI_WGS_1_52672185	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6342629					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52152489 () rs orientation: forward

Symbol	Name	Function Class
Cpgi240	CpG island 240	190 bp proximal
Gm28177	predicted gene 28177	within coordinates
Gm31812	predicted gene, 31812	within coordinates
Rr366897	regulatory region 366897	within coordinates
Rr410805	regulatory region 410805	within coordinates
Rr410806	regulatory region 410806	411 bp proximal