rs6342288 SNP Detail

Summary

• ID
  rs6342288
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98107833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTGGAGAG AGTTAGAAGG TGTGAAAGAA TATGATCAAA
  ATATATCATA CAAAAAAACT TTTCAAAACA AATTTAAAAA TAAAAGAGTG TAATAAATTT
  W
  AAAAAAATAA TAAAAGGATG TTTCTAAAAC AAAAGAAGCA AGAAAGATCA CTGGATGTCC
  TAGGATCTGG GTCAGGTCAC AGCCATAAGA ACCCAGTGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8748323	WI_WGS_4_95983921	WI	MOUSE	f	SNP		A	T
ss45628090	mCV25205175	ABI	CRAMUS_MOUSE	f	SNP	A	A		T
ss147086905	ENSMUSSNP4926625	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			T
ss321220341	CHEV_4_97886287	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6342288					SNP	A	A	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98107833 () rs orientation: forward

Symbol	Name	Function Class
Gm70434	predicted gene, 70434	within coordinates
Rr378	regulatory region 378	1964 bp proximal
Rr595710	regulatory region 595710	1746 bp proximal