rs6341777 SNP Detail

Summary

• ID
  rs6341777
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9027805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA AATTCATCTC TGTGGAATCC
  R
  GTAGTCAGTT TATTATTATT ATTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8747810	WI_WGS_4_8502192	WI	MOUSE	f	SNP	A	G
ss145985293	ENSMUSSNP3414386	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss321038632	CHEV_4_8954952	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6341777					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9027805 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14013	CpG island 14013	34 bp proximal
Gm68854	predicted gene, 68854	within coordinates
Rr588643	regulatory region 588643	1387 bp distal
Rr588644	regulatory region 588644	510 bp distal
Rr588645	regulatory region 588645	21 bp distal
Rr588646	regulatory region 588646	126 bp proximal
Rr588647	regulatory region 588647	151 bp proximal
Rr588648	regulatory region 588648	996 bp proximal