rs6341192 SNP Detail

Summary

• ID
  rs6341192
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138591991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CATTCCCACT
  GTGTTGAGCA TCCTCCAAGA TAAGGAAACT NTAGAGCATT GATTTCAACC AGGGGTGACT
  AACTGCCCTG GGACACTTAA CAGAAGAGCA TATATACGGT GACTAAGAGG ATGCTCCTGA
  TATGNCTGGG TGAGGGCCGT GAATATTGCT AAGCATCACA TGAAGTTCAG GAGCCCCTAC
  CACAAAGATG AGTCAGGCAT TGAAAAAGGT CACTTGGGAA TGAGGATGAA AACTCCCTTC
  R
  GAGGGATCAG ACCTTTTTTT GACGGTTGGG GTGGGGGGCT ATCTTGGCAC CATAGTTTGA
  CCTACATCTT AGTCTTTAAT TCAGGCCAAA TGGACCAGAA GGGGCATCCT TAACGAAATC
  CCCCTGCTCT TTGGGCAGTG CTGTCCTCTA TACAACACGC AGGAACTTAG TTGACTTTAA
  AGGCTAGGGC TGAAGTTGCT CTGCCCGCAG CTGTGCCTGC AGCGTTTGCA GACCGAAGGC
  TTGCTTTCCC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8747224	WI_WGS_4_136478676	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6341192					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138591991 () rs orientation: forward

Symbol	Name	Function Class
Gm32930	predicted gene, 32930	within coordinates
Pla2g5	phospholipase A2, group V	1207 bp upstream
Rr398630	regulatory region 398630	1791 bp upstream
Rr603035	regulatory region 603035	1791 bp proximal
Rr603036	regulatory region 603036	1912 bp proximal
Tssr39889	transcription start site region 39889	1103 bp downstream
Tssr44191	transcription start site region 44191	1189 bp upstream
Tssr44192	transcription start site region 44192	1075 bp upstream