rs6340543 SNP Detail

Summary

• ID
  rs6340543
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21709653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGTTTTT ATGCCCCCTA
  GTGGGCAGTT AGTATTAATG CAGTTGCAAA ATCATGTAGC TCATTTGGCA GCCTTTCTTT
  TTGGTCAATT GAATTCAGAC TCTGTAATCA ATAATATATG GCATTGAGAT TCCCTTAATG
  GTTACAATAA TGTTTTAAAT ATTATTGAGC CATAATAGTA ACTTAGCCAG AAGACCTCAA
  K
  CTATGAAAGA GAATCTTCCA TTTAAATGGT TTTCTTTCGT TTGGCTATTC AACTCTCATA
  GACTCGGTTA TAGAGTGGTT GTCCAGTATG AGTGAGGATT TTCTTCTCCT TAAATCAAAC
  AAGAAGGTCT CAGGAAAGGG AAAAATTATG TGAAGAAGCA GAACTTTATT CCAGACAATT
  CACCATAGAG GGTCCACATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8746575	WI_WGS_6_21650892	WI	MOUSE	f	SNP							T	G
ss47828350	NES11694520	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T			T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6340543					SNP	T	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47828350	NES11694520	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21709653 () rs orientation: forward

Symbol	Name	Function Class
Kcnd2	potassium voltage-gated channel, Shal-related family, member 2	Intron
Rr627000	regulatory region 627000	76 bp distal
Rr627001	regulatory region 627001	172 bp distal