rs6340136 SNP Detail

Summary

• ID
  rs6340136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114817759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGCCTGC ATTGCTGCTG
  TGCGCACAAC ACAGAAGCAG CCCAGACGAA TGTGCTGGTC CCACAGAACT GTTTGTCACC
  ACACCTTACT CCTACTCTGT GATGGCTAGG GAGAGGAACC CTGAGGAATA GAGCATAAGT
  AACTTGTCCC AAGTCCATCA GCTAAGGGCC GGTAGAGCCA GGGTTCCGTG TGCTGAAACC
  Y
  CGAGACTAAA GCATCCCACA GGGCTACTCT TGCTAGGAAG AGGTTTTTAT ATCCCCCCAC
  CACCACCTGT CCATCTGCTT TCTTTTGTCT GAGACCCTTT TGCTGTAGGG CAAAAGCCAC
  CTCAAAAGAG ACCTTGCATG TCCTTGCTGG AGTCAGTAGA GAACTGGGAT GGGGAAGGCA
  CTGGCAACCA TCTGCTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss8746167	WI_WGS_6_115622091	WI	MOUSE	f	SNP						T	C
ss48052932	NES11875944	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T			T	T	T		C	T	C		T
ss321914871	CHEV_6_114790816	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs6340136					SNP	T	T	C	T	T	T	C	T	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48052932	NES11875944	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114817759 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm67840	predicted gene, 67840			496 bp upstream
Rr636840	regulatory region 636840			1537 bp distal
Rr636841	regulatory region 636841			317 bp distal