rs6340022 SNP Detail

Summary

• ID
  rs6340022
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114817697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAACCATG CACTTAAGCA
  GGTCTGGGAA AGTTGATAAT CCATCTTCTC CACTATCCAC TAAGCTGCCT GCATTGCTGC
  TGTGCGCACA ACACAGAAGC AGCCCAGACG AATGTGCTGG TCCCACAGAA CTGTTTGTCA
  CCACACCTTA CTCCTACTCT GTGATGGCTA GGGAGAGGAA CCCTGAGGAA TAGAGCATAA
  R
  TAACTTGTCC CAAGTCCATC AGCTAAGGGC CGGTAGAGCC AGGGTTCCGT GTGCTGAAAC
  CTCGAGACTA AAGCATCCCA CAGGGCTACT CTTGCTAGGA AGAGGTTTTT ATATCCCCCC
  ACCACCACCT GTCCATCTGC TTTCTTTTGT CTGAGACCCT TTTGCTGTAG GGCAAAAGCC
  ACCTCAAAAG AGACCTTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8746052	WI_WGS_6_115622029	WI	MOUSE	f	SNP	G	A
ss321914868	CHEV_6_114790754	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6340022					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114817697 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm67840	predicted gene, 67840			434 bp upstream
Rr636840	regulatory region 636840			1475 bp distal
Rr636841	regulatory region 636841			255 bp distal