rs6339665 SNP Detail

Summary

• ID
  rs6339665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:6289753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAATCCA AAGGAAGTCG
  CTAAAGGATA GGAAAAAGGT TTCAGCCTAG ACCCAGTTTT AGAAGCCCAA CCAGTTACCG
  TGAGTTCGGT CTCACTTAGC CTCAGCAGCT TATACACAGG GCTTGGTGCC GAGCAAATGA
  GTAAAAGGGG TGAACGTGTA GGTGGGTGGC AAGGTGGGAA GGTGTTCAAT AAACGCTGAT
  R
  GGGGCAGCTT CAAAAAACTG ACAGTGGACT CATTGATGAC GGCGTTTGGG GTGTATGGGG
  AGTACTTCTT TTTATAAAAA GCAACCCTTG TAGCCTGCAC TTCAGGAAAC AGTGGCCAAT
  GGCTGTCGTT TCTCACCAAG TGTTCTGTAT TTGGAAAGGG TCGGTCCTCC AAGGCTTTCT
  TCCTGCTCCT TGGTCCAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8745693	WI_WGS_6_6024325	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6339665					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:6289753 () rs orientation: forward

Symbol	Name	Function Class
Gm20619	predicted gene 20619	within coordinates
Rr626230	regulatory region 626230	23 bp proximal
Rr626231	regulatory region 626231	256 bp proximal