rs6339330 SNP Detail

Summary

• ID
  rs6339330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148215946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTTTTATC ACTGATACGA AGTGCCATTC CCTCTGTCTT
  GTGTGCTCAG CTATCTGCTG ACAGAAGGCC TTGGAAGGCT CAGCCAGTGT CCCATCCTCT
  Y
  GATGCTCCAG TGCTGGGAGG AGCAGTCATA CTATCCAACT GAGCCAAGCC AACCTGCAGC
  ATCATGAATA GTAACAAACT ATTACTGTCT TGAGCCACG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8745356	WI_WGS_2_149407839	WI	MOUSE	f	SNP		T	C
ss45307996	mCV24014771	ABI	CRAMUS_MOUSE	f	SNP	C	T		C
ss147923711	ENSMUSSNP7151630	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss320555344	CHEV_2_148199762	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6339330					SNP	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148215946 () rs orientation: forward

Symbol	Name	Function Class
Rr566885	regulatory region 566885	1487 bp distal
Rr566886	regulatory region 566886	within coordinates
Rr566887	regulatory region 566887	1399 bp proximal
Rr566888	regulatory region 566888	1484 bp proximal
Rr566889	regulatory region 566889	1865 bp proximal