rs6339152 SNP Detail

Summary

• ID
  rs6339152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:6289631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCAAGGA TTTGAGAAAA
  AAAAAAATCC AGTATGAAAT TAATATATAG CCTGGTTCTT TTACGCAGCC TAACACCCTG
  CTTACCTTTG AGTGGAGAAC AGAGAACCTG GGGGAGAAGA AATAGGAATC CAAAGGAAGT
  CGCTAAAGGA TAGGAAAAAG GTTTCAGCCT AGACCCAGTT TTAGAAGCCC AACCAGTTAC
  Y
  GTGAGTTCGG TCTCACTTAG CCTCAGCAGC TTATACACAG GGCTTGGTGC CGAGCAAATG
  AGTAAAAGGG GTGAACGTGT AGGTGGGTGG CAAGGTGGGA AGGTGTTCAA TAAACGCTGA
  TGGGGGCAGC TTCAAAAAAC TGACAGTGGA CTCATTGATG ACGGCGTTTG GGGTGTATGG
  GGAGTACTTC TTTTTATAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8745178	WI_WGS_6_6024203	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6339152					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:6289631 () rs orientation: forward

Symbol	Name	Function Class
Gm20619	predicted gene 20619	within coordinates
Rr626230	regulatory region 626230	145 bp proximal
Rr626231	regulatory region 626231	378 bp proximal