rs6338801 SNP Detail

Summary

• ID
  rs6338801
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100995444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA GACCAACACT
  ATGGAACAAC TGTACTATCC TACTCCAGAA AACACAACCT ACACACAGGT ATCTTTGACC
  TTCTGGGCCT CAGAACACTT TAAATCTTCA AGACACAAGA AAGGCACACA AGGAGGGGAT
  GAAGAAAGCT TCTACACCAA ATAAGCTAGT GCCCATCACC GTTGCTAAGA GTCCTGCGCT
  Y
  GCTGTGACAG CCCGCTCAGC TTGGGTCCCC TTAGAGACAC CTCAAAGCCA TCCAGCCTCA
  GCGGCCATTG ACTTGGATTC TTGGTGGAAC ACAGCGCAAG GACGGAGTCA TGGGAGGAGA
  AATCTGAGTG CTTGTGAGAA AACTCCAAGA AAACATGCCT TGGGACCTCA GTTTCTTCAA
  AACACGGAGT TGTTCTTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8744826	WI_WGS_3_101199948	WI	MOUSE	f	SNP							C		T
ss46811222	NES10724734	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6338801					SNP	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811222	NES10724734	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100995444 () rs orientation: forward

Symbol	Name	Function Class
Gm43465	predicted gene 43465	735 bp upstream
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581954	regulatory region 581954	849 bp distal