rs6338319 SNP Detail

Summary

• ID
  rs6338319
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100995390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACTTTAA AAACAACAAC
  CCACACTAAC AGAACCATGA TTTAAAAAAA AAAAAAAAAA AAAAGACCAA CACTATGGAA
  CAACTGTACT ATCCTACTCC AGAAAACACA ACCTACACAC AGGTATCTTT GACCTTCTGG
  GCCTCAGAAC ACTTTAAATC TTCAAGACAC AAGAAAGGCA CACAAGGAGG GGATGAAGAA
  R
  GCTTCTACAC CAAATAAGCT AGTGCCCATC ACCGTTGCTA AGAGTCCTGC GCTCGCTGTG
  ACAGCCCGCT CAGCTTGGGT CCCCTTAGAG ACACCTCAAA GCCATCCAGC CTCAGCGGCC
  ATTGACTTGG ATTCTTGGTG GAACACAGCG CAAGGACGGA GTCATGGGAG GAGAAATCTG
  AGTGCTTGTG AGAAAACTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8744344	WI_WGS_3_101199894	WI	MOUSE	f	SNP							A		G
ss46811213	NES10724729	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6338319					SNP	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811213	NES10724729	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100995390 () rs orientation: forward

Symbol	Name	Function Class
Gm43465	predicted gene 43465	681 bp upstream
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581954	regulatory region 581954	795 bp distal