rs6338085 SNP Detail

Summary

• ID
  rs6338085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135870158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGAAGTA GAGGCCTTAG
  ATCTGGCTAG AATTGTTGTG ACCACTATGC TTTTCACCCA TATCAAAGGG GCACCAAGTC
  CCCTATGAGG AGTACTTGTC TTGGAACTGA TGAGGGAGCA CCATGGCCTC TTTGAAGATG
  CATCCTGATC TCTGAGGCAA TACTCTCATC CCTATGGGGA ACACTCAACT CCTATGAGGG
  R
  CTATGCTTGG ATCCATGTAG TGAGTTTCTA CACCCATTTG AGAGTGGGAT AGCATGAGCT
  AGGGACCCCA TTCATATCTA TGTGAGGGAG CATCCAAGCT CTGTGAAGGA ACACTCTGGC
  CAATGTGAGG GAGCACTCTC ATTCCCGTGA GAAGTACTAA GGCCAATGCA TAGGAATGCC
  CCAGTTCATG TAAAAGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8744110	WI_WGS_3_136649834	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6338085					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135870158 () rs orientation: forward

Symbol	Name	Function Class
Bank1	B cell scaffold protein with ankyrin repeats 1	Intron
Rr585808	regulatory region 585808	937 bp proximal