rs6337262 SNP Detail

Summary

• ID
  rs6337262
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17488804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACT GCTGTTGCCT TCTGCTTGTT
  Y
  TTCCTCAAAA CACACACTCC GTGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8743286	WI_WGS_6_17357515	WI	MOUSE	f	SNP								T		C
ss45953913	mCV23974556	ABI	CRAMUS_MOUSE	f	SNP		C	C					T			C
ss47812548	NES11721587	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		C		C	C	T		C	T	C	C		C
ss133015369	ENSMUSSNP3992889	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C								C
ss321754720	CHEV_6_17438805	CHEVERUD	SCREENING_POP	f	SNP														T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6337262					SNP	C	C	C	C	C	T	C	T	C	C	C	C	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47812548	NES11721587	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17488804 () rs orientation: forward

Symbol	Name	Function Class
Met	met proto-oncogene	Intron
Rr626803	regulatory region 626803	88 bp distal