rs6335055 SNP Detail

Summary

• ID
  rs6335055
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148940715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TCTTTTTCCC
  GCCTCTTTCC TTCTTTGCCC CAAATCCTAA GCAAAATTaa gaaagattga aagattggaa
  gacagacaga tagacagaag gaaagaagga aggaaggaag gaaggaagga aggaaggaag
  gaagnaagaa agaaagaaag aaagaaagaa agaaagaaag aaagaaagaa agaaagaaag
  aaagaaagGA GGCTGCACCC AAGCTTCCTG TTACTGGCTC CCGAAGAAAC CAGTCAAATC
  K
  CCCCTTGTTG AGAACATTTT GACAGCATAA AATTGCTGCC GGAATGTGAC TTTAACGAAA
  AGTaaaaaaa aaaaaaaaaa aaaaaaaaaa agggaaaaga aaaaaaaaaa aaCCTTCCTT
  CATGCATATG GAGTTTTTTG GAAAAAAAAA TGGTATTTTA ATGCTTTCTA TTAAATTGGG
  ACTAAAAGTG GTGTCTTAAT TTGCATGCAT TAGCATATTT GCATATAGAT CACTGAAATG
  GTGGAAGAGA                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8741070	WI_WGS_4_144233011	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6335055					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148940715 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	Intron
Rr407036	regulatory region 407036	within coordinates
Rr604775	regulatory region 604775	1472 bp proximal