rs6334968 SNP Detail

Summary

• ID
  rs6334968
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67353404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CTGAGCCATC
  GCTCCAGCCA AAATACCTAC CTATTTTTCT TCTCGTCTTT TTTTTTTTTT TTTAACATGG
  GAAGTTGTAA TTTTTAGAAA TACACATTTT TTTAGATTTG CTGAAAAATT ATAAGGAATT
  ACAGAGAATT CATTCCATTT CCTCTTAGTA AACAGCAACT AATGGCAACT AATGGAACAA
  TGTTAATTTA TTATTCATAA AACCCACATT TATTCAAATA TTTATGGTTA TTGCCTATAT
  S
  CCCTTTCTGA TTGTATCCCA TTCAGCTAAC ACATTAGATT CCGTTGTCCT GTCCTCTTAG
  GCTTCTGTCA CAgctagttt tatgtcacct tggcataagc tggtaacggg aacttcagtt
  gagaaaagac tcctaccaga ctggcctacg gtgcttgttc ttgagtgatg agtgatgtgg
  ctggtaccat ccccggggtt ggtggttctg gttctaggag gcaggctgag cagaccaggg
  gcgcaagcAG                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8740983	WI_WGS_3_68043555	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6334968					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67353404 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gfm1	G elongation factor, mitochondrial 1			Intron
				Noncoding-Transcript-Variant
Rr577920	regulatory region 577920			1237 bp proximal
Rr577921	regulatory region 577921			1763 bp proximal