rs6332672 SNP Detail

Summary

• ID
  rs6332672
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127598411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTAAAATG ATTTGACTTT AATGGTATGT AAGTAATAAG
  CTTTAACTTT CAAATGTATT GAGTCATTAC TTGCAGTGAA GTCAGTATTC AGGTGTGCCC
  M
  TCCCCTCCCC TGCTAGCTCT GTGCTCTTCG GAGTTGTTGC CCCTGTGTCC CATGTGCCTC
  TCTTCTGTGG AAGTGTAACT TAAATGCAGA GAGAAGCTA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8738676	WI_WGS_2_128737420	WI	MOUSE	f	SNP			A	C
ss45200124	mCV22279957	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss147540738	ENSMUSSNP3009159	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss320500683	CHEV_2_127582227	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6332672					SNP	A	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127598411 () rs orientation: forward

Symbol	Name	Function Class
Nphp1	nephronophthisis 1 (juvenile) homolog (human)	Intron
Rr564596	regulatory region 564596	675 bp proximal
Tssr26143	transcription start site region 26143	773 bp upstream