rs6332652 SNP Detail

Summary

• ID
  rs6332652
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127598403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGATGTCA CTAAAATGAT TTGACTTTAA TGGTATGTAA
  GTAATAAGCT TTAACTTTCA AATGTATTGA GTCATTACTT GCAGTGAAGT CAGTATTCAG
  S
  TGTGCCCATC CCCTCCCCTG CTAGCTCTGT GCTCTTCGGA GTTGTTGCCC CTGTGTCCCA
  TGTGCCTCTC TTCTGTGGAA GTGTAACTTA AATGCAGAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8738656	WI_WGS_2_128737412	WI	MOUSE	f	SNP			G	C
ss45343337	mCV22279956	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss147540733	ENSMUSSNP4940207	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss320500682	CHEV_2_127582219	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6332652					SNP	G	C	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127598403 () rs orientation: forward

Symbol	Name	Function Class
Nphp1	nephronophthisis 1 (juvenile) homolog (human)	Intron
Rr564596	regulatory region 564596	683 bp proximal
Tssr26143	transcription start site region 26143	765 bp upstream