rs6330943 SNP Detail

Summary

• ID
  rs6330943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39869505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATGGAAA CTTAATTTCT
  GAGTGCAAAA TTTTATTTGT TCTTTCCTAT AGAATAAAAG CAGCATGGTA GAGAATCCCT
  TGCAACCTCC ACTTGAAACT GTGTAAAATT ATGAAGTTAT GTACCCTGAT GTTTAAAAAG
  TTTCTGGTAG AAAGTATAAA AGCAAAAAGC ACCAAGAAAA CAAGCCCCTT CCCCAAATCA
  R
  CATGAGCAAA GGTCGTATGA TCTCACAGAG ACTGAAGTAG CAATTGTGGG GCTTGCACGG
  GATTGCTCCA GGTCCTGTGC ACATATGTTA TGGTATCCAC TTCAGTAAGT TTATGGGGCT
  CCTAATAAGT GAATGAGTGG ATTTCTAATT TGCTTGCATT CTCCTGGGTT CTCTTCTTTC
  TGTTGTTGTT ACTATTGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8736943	WI_WGS_3_39702282	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6330943					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39869505 () rs orientation: forward

Symbol	Name	Function Class
Rr575773	regulatory region 575773	191 bp distal
Rr575774	regulatory region 575774	311 bp distal