rs6330154 SNP Detail

Summary

• ID
  rs6330154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:99034670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTACAAAG CAATTACACT
  AAGCACCTAC CTGTGTGTAA CCTTGAGATA GATACTTTCG TCTGCCATGT TCTCCTGCTA
  TGATTTCAAG AGAAGACATT TATTGTGATA GATTGGGAAT CATGAGTGCT CTGGTGAGCT
  CAGTGCTAAT GAAATCTCCA AAGGTTTTCT CTCTTATTCA GCACTACTCC TAAGCTTTGA
  R
  TCTGACAATA GCTATTTGTT AGGCAAAGCG ATCAATTAAT ATAGTCTCTC TCAATCCCAT
  ATGTATTTAA GTGGCCATAT CTAAATATTT GCAATATACT TTTCAAGTGC AAGAATTTCA
  GTTGTGTGTG GAATAGAAAA AAATTCAAGG AAAAATGCAG TGAAAAAAGT ATGGTGATCC
  ATTTCTAAGT ATTTGTGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss8736149	WI_WGS_4_96933106	WI	MOUSE	f	SNP							A		G
ss38240801	NES09552724	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	G		G		A	A	A		G	A	A		A
ss147095547	ENSMUSSNP5214589	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss321222907	CHEV_4_98813124	CHEVERUD	SCREENING_POP	f	SNP													A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs6330154					SNP	A	G	A	G	G	G	A	G	G	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38240801	NES09552724	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:99034670 () rs orientation: forward

Symbol	Name	Function Class
Gm12681	predicted gene 12681	481 bp downstream
Rr595831	regulatory region 595831	450 bp proximal
Rr595832	regulatory region 595832	1801 bp proximal