rs6329946 SNP Detail

Summary

• ID
  rs6329946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79524531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ATAACCTTCA
  TTATTATTCC ATATTATTAA TGAAATGATT AGGTTTGTTT CTTAAATTAC ATGTGAATTC
  AACACTCAGA AAACTTTTGT TAGAAACTTC CCTTAAATCT AGAActctct ctcttctccc
  cctctctctc ttccctctct ctcttctccc tctctctctt ctccctctct ctcttctccc
  tctctctctt ttccctctct ctcttctccc tctcncctct cngctctctc tctctctctc
  Y
  ttccctacac acacacacac acacacacac aAGGAGATCT AACTAACTTT TATTTATTCT
  ACTGATCAAT TTTACTTTTA CTTTTAAGCC ACCTGGATCC AAAGCAAAAG AATCTCTCTT
  GCATTTTGTA CTCTTACTCG TCAAGAATTG TTCTGGAAAA CTCAAACTTT AGTAGTATGC
  AACTTAGTAC TATGGAATTA TATATGCCCA TTAAGATTTT TATTAGGTTA ACTAGTCCCA
  AGAGCTCTTT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8735941	WI_WGS_2_80574673	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6329946					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79524531 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11846	CpG island 11846	1845 bp proximal
Rr560025	regulatory region 560025	1844 bp proximal