rs6329296 SNP Detail

Summary

• ID
  rs6329296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:67798810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAATATA GATTGCCAGA
  GCACAATGCC TGCTGACCCT GCTCTCTGTC TGATGTTAGG TTCTTCAGAC AAGGTGAAGT
  CCATGTGTGC TCCTCAGAAA TTATTAGCCT CCTTGGTAGC CTAACAAAAT CGTGGTTATT
  GTCCTTAAGA ACTTAATTTG CTCAAGATCT TTTCTTACCA TCCTTAATTA TGGATATATT
  Y
  ATGGGTGTGA ACCACCTGCC TGCTCAGGGC ATTGCATAGC TGCATCTGTG ATGTACCTAC
  CACTTAATGG GTCAGGGCTC CTTCTTTATA CTCTCTGTGC TTCAAACTCT ATGTTCACGT
  AACAGCACTC TGCTCAGCTT CTGAGAATTA AGAGGTTATT TTTCAGGATT TTTATCTGAA
  CTAAACACCA GTGGCTATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8735290	WI_WGS_3_68488949	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6329296					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67798810 () rs orientation: forward

Symbol	Name	Function Class
Iqcj	IQ motif containing J	743 bp upstream
Iqschfp	Iqcj and Schip1 fusion protein	755 bp upstream
Rr577963	regulatory region 577963	447 bp proximal
Rr577964	regulatory region 577964	766 bp proximal
Tssr29450	transcription start site region 29450	651 bp upstream
Tssr29451	transcription start site region 29451	712 bp upstream