rs6328250 SNP Detail

Summary

• ID
  rs6328250
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172317598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GCTCATTTAC
  GGCTTGCTTC TTACCTCTGC CCTCCCTCAC ACCCTCAGTT CTTCAGATAA AATCCAATCA
  GCCCATAGGC TCTGAGTCGG GAACTTTCAC TCCTTGGTCA AGGTCATAGT TAAGGTATAT
  TGGGCCCTGA ATGATGCAGC TCACCCGTGC ATAGTTTCTC CCTCTCCACT AGAAGGGAGG
  CAGTTGTAAT CATTCCCATT TCATAGGTGA GACTGAGGCA GAGAATCAGG TAGAGGTAGT
  R
  TGATGAGTCT AAGACCCGCC CCTTCTGATT CCCAGACTTC CCTGGGCACT CGGCTCTGGC
  TCTCCCCCTA GTTCCCGTCA TGCAGCCTGT GTTCAGCTGT AGCAGTGTTG GGATGGTCCT
  GGTAGACAGG TGACCCTGGG CTAGTCCCGT GTACCCCGGG AGCCTCCAGC TCTGAGAGGA
  GTTCTCCGTG GGTTTTGAAC TCTGCTTTGT GGGATGATAG CCTTTCTGGC AGCCCCTGAT
  GCCTCTTTCC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8734239	WI_WGS_1_173780204	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6328250					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172317598 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1051	CpG island 1051			482 bp proximal
Igsf9	immunoglobulin superfamily, member 9			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr423587	regulatory region 423587			895 bp distal
Rr423588	regulatory region 423588			323 bp distal
Rr423589	regulatory region 423589			536 bp proximal
Rr423590	regulatory region 423590			715 bp proximal