rs6328139 SNP Detail

Summary

• ID
  rs6328139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9027568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGTAAT ATCAATGTGA
  CTATAGATTT TATTTTCCTG AGAGGAAGAT CCTGCTATAA GAACCACCAG GCACTGTTTA
  GTTTAGGTTT GGCCCCCCTG GATGATTTTA GTAAAGTCAC CAGCATTGAT CTTTGAGCCC
  TTTTAAGGTG TTATTTTGTC GCTGGGGCTC TCTCTGGCTT CCATGGCTTC TTCTTGCCTT
  Y
  CTCTCAGTGT GTAATTACTC TCGCCTCAAT TTGTTTACAC AGCTTGGAGA TGGGGACAGA
  GTTCTCTGGT GACCGTGCAA CTGCAGCAAT CACCGTAAAG AGAAGCATTT AGACGCTATA
  AAACCTAAAC GCCCGGCATG CACCATTACA TAGCAGTTAC TGAAATTTAG CAAATTAAAT
  TAAATAATTT AAATAACTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8734128	WI_WGS_4_8501955	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6328139					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9027568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14013	CpG island 14013	271 bp proximal
Gm68854	predicted gene, 68854	211 bp downstream
Rr588643	regulatory region 588643	1150 bp distal
Rr588644	regulatory region 588644	273 bp distal
Rr588645	regulatory region 588645	within coordinates
Rr588646	regulatory region 588646	363 bp proximal
Rr588647	regulatory region 588647	388 bp proximal
Rr588648	regulatory region 588648	1233 bp proximal