rs6327431 SNP Detail

Summary

• ID
  rs6327431
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:131871967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGTGGGGGCG
  CCGCTGCGGG GGTGGGGGTG CTCCAGCGTG CTTGGCCAGT GATCCGCGGG ACCCGCTCGC
  TTGGGCCGGC CTGGGCGGCG ACAGTGCGGT TGAGGGCGGG CGCCCCGCCC ACCTGGCCCC
  TCCGCCCCGC CTCCCCGAGC TCTGCCTTTA TCTGCCGATC CTTGACCAAC CCACCCGCCA
  CCCTGCAGtt ctctccccac ccctcttctc ttgcctttct ttcccttctc cccctccctc
  Y
  cctCTAGGGG GCGGAGCTTC TCCCCTCCCT TCAAGACAGA CAATGCTGTG GCTTCGCGTC
  GCCTCCTCCC TTCATCTCTA CCCCCCCCCT CCCCGCGTAC CCCCACCCCA CCTCGCGCGG
  GCTGCCAGCG TTTCTTCTCA GCAGGCCAGA GTGCATGAGG AGGAGGAGGC GGAGAGCGTG
  GGTGGAGGGA ATAAGGTGCT GCCTCTCACC CCATCGCGCC TGCCCTCTCC AAGCCACGCC
  GAGATTTAGC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8733419	WI_WGS_2_133032731	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6327431					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131871967 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12299	CpG island 12299	within coordinates
Gm31179	predicted gene, 31179	404 bp upstream
Gm75461	predicted gene, 75461	within coordinates
Rassf2	Ras association (RalGDS/AF-6) domain family member 2	Intron
Rr367316	regulatory region 367316	571 bp downstream
Rr397324	regulatory region 397324	within coordinates
Rr565379	regulatory region 565379	1552 bp distal
Rr565380	regulatory region 565380	within coordinates
Rr565381	regulatory region 565381	within coordinates
Tssr20293	transcription start site region 20293	1693 bp downstream
Tssr20294	transcription start site region 20294	61 bp downstream
Tssr26436	transcription start site region 26436	863 bp upstream
Tssr26437	transcription start site region 26437	842 bp upstream
Tssr26438	transcription start site region 26438	243 bp upstream
Tssr26439	transcription start site region 26439	234 bp upstream
Tssr26440	transcription start site region 26440	225 bp upstream
Tssr26441	transcription start site region 26441	203 bp upstream
Tssr26442	transcription start site region 26442	146 bp upstream