rs6327054 SNP Detail

Summary

• ID
  rs6327054
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:33785568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGAAAGGC CATGTGACTT GGTATGGCTC CAGTCCAAGC
  CACAAGCTCA CACACCAGAG GAAAAAGTTC CAGAACCAAG ATCTAAGCTC CAGGGACAGC
  W
  AGCAGAATCA TTTATCAGGC CATGAGAAGG GACCGGGCTT GCTATGCTCA CTAAACAAAG
  AGACGTAAAG AGGAGAACAG GTGCCAGAGG AGTCATCAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8733042	WI_WGS_5_32327917	WI	MOUSE	f	SNP								A		T
ss51694553	NES14742070	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		T		T	A	A	T	A	A	T	T
ss148213862	ENSMUSSNP503596	ENSEMBL	ENSEMBL_Sanger	f	SNP		A									T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6327054					SNP	A	A	A	A	A	A	A	A	T	T	T	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51694553	NES14742070	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33785568 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15737	CpG island 15737			606 bp proximal
Fam53a	family with sequence similarity 53, member A			Intron
				Noncoding-Transcript-Variant
Gm9903	predicted gene 9903			1701 bp upstream
Rr399034	regulatory region 399034			1414 bp upstream
Rr609574	regulatory region 609574			within coordinates
Rr609575	regulatory region 609575			483 bp proximal
Rr609576	regulatory region 609576			678 bp proximal
Rr609577	regulatory region 609577			1388 bp proximal
Rr609578	regulatory region 609578			1712 bp proximal
Tssr45824	transcription start site region 45824			1691 bp upstream
Tssr45825	transcription start site region 45825			1725 bp upstream
Tssr50608	transcription start site region 50608			1311 bp downstream
Tssr50609	transcription start site region 50609			1353 bp downstream