rs6326953 SNP Detail

Summary

• ID
  rs6326953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114817605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAGCTC TGCACCTGTG
  TGCTTGCCTG GTCAGCCGTG GGGCCTGCAG GAGGACCAAA ATTCATGACC ATGCCAGAAA
  GCTTAGCATG GGATGAACCA TGCACTTAAG CAGGTCTGGG AAAGTTGATA ATCCATCTTC
  TCCACTATCC ACTAAGCTGC CTGCATTGCT GCTGTGCGCA CAACACAGAA GCAGCCCAGA
  Y
  GAATGTGCTG GTCCCACAGA ACTGTTTGTC ACCACACCTT ACTCCTACTC TGTGATGGCT
  AGGGAGAGGA ACCCTGAGGA ATAGAGCATA AGTAACTTGT CCCAAGTCCA TCAGCTAAGG
  GCCGGTAGAG CCAGGGTTCC GTGTGCTGAA ACCTCGAGAC TAAAGCATCC CACAGGGCTA
  CTCTTGCTAG GAAGAGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8732941	WI_WGS_6_115621937	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6326953					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114817605 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm67840	predicted gene, 67840			342 bp upstream
Rr636840	regulatory region 636840			1383 bp distal
Rr636841	regulatory region 636841			163 bp distal