rs6326522 SNP Detail

Summary

• ID
  rs6326522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9027248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGTGCAG ACAGCATGTA
  TACCCCCATA TGCACACACG TGTGCATGTG CTCGCGCGCG CACACACACA GATTTAAGAT
  AATATATTCG TGTGCAACTT CCTGTTTGTG CAAATTAGAC ATAGCTGTTC GTGCAAATAT
  GGCGTGCACG TTGGAACTTC ACAAAGGAGA ATGTGAGGGT TCCTTTAATG AAAAGACTTA
  Y
  ATTTGGCTGC CGAAATCATT CCTTGCTCAT AGGAGGAACA AAGTTTCTAG ATTTTTCTGG
  GCACAAATTT TCTAGCTGGG AAGCTAGTTA AAATGTACAT TCACGAACTT AAACAGTTTA
  AGGTGTAATA TCAATGTGAC TATAGATTTT ATTTTCCTGA GAGGAAGATC CTGCTATAAG
  AACCACCAGG CACTGTTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8732509	WI_WGS_4_8501635	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6326522					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9027248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14013	CpG island 14013	591 bp proximal
Gm68854	predicted gene, 68854	531 bp downstream
Rr588643	regulatory region 588643	830 bp distal
Rr588644	regulatory region 588644	within coordinates
Rr588645	regulatory region 588645	165 bp proximal
Rr588646	regulatory region 588646	683 bp proximal
Rr588647	regulatory region 588647	708 bp proximal
Rr588648	regulatory region 588648	1553 bp proximal