rs6326117 SNP Detail

Summary

• ID
  rs6326117
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:6821564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCAGTCA GGCCTGCCAT
  ACACAGCAGC CACACAAGGT ATTTTTCTGA ACAAATGTAT GAGTGTTTAG CATTTGTTGT
  AATACAACTG AGTGACTACA ACTCCAATGA ACACAGCTCT ACATTACAAT ATTCATGTAG
  AGTGCAAAAG AACACATCTT TTCTTCCTCT TTCTACCTAA GGTAAAACAA AACAATACAA
  M
  ACAAAACAAA ACAACACAAC AACCCCAAAT GCCAAATGTT GAAGCTCCAC ATTCAGAGAC
  TATGACTTAG CTGGCCAGCA AGCCACCTGA GCATCAGTGT TTTTAGAATA CTAAAGTTCA
  TGTATATACA AAAGTGACAA CCACCAATAT ATCAGTGTAA CATTGTTATG TTTTCTTTTG
  TTTTAAACAG GGTCTCACTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8732104	WI_WGS_2_6824815	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6326117					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6821564 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Celf2	CUGBP, Elav-like family member 2			Intron
				Noncoding-Transcript-Variant
Rr372727	regulatory region 372727			1074 bp upstream