rs6326116 SNP Detail

Summary

• ID
  rs6326116
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:6821559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGCTGGC AGTCAGGCCT
  GCCATACACA GCAGCCACAC AAGGTATTTT TCTGAACAAA TGTATGAGTG TTTAGCATTT
  GTTGTAATAC AACTGAGTGA CTACAACTCC AATGAACACA GCTCTACATT ACAATATTCA
  TGTAGAGTGC AAAAGAACAC ATCTTTTCTT CCTCTTTCTA CCTAAGGTAA AACAAAACAA
  W
  ACAACACAAA ACAAAACAAC ACAACAACCC CAAATGCCAA ATGTTGAAGC TCCACATTCA
  GAGACTATGA CTTAGCTGGC CAGCAAGCCA CCTGAGCATC AGTGTTTTTA GAATACTAAA
  GTTCATGTAT ATACAAAAGT GACAACCACC AATATATCAG TGTAACATTG TTATGTTTTC
  TTTTGTTTTA AACAGGGTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8732103	WI_WGS_2_6824810	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6326116					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6821559 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Celf2	CUGBP, Elav-like family member 2			Intron
				Noncoding-Transcript-Variant
Rr372727	regulatory region 372727			1079 bp upstream