rs6325260 SNP Detail

Summary

• ID
  rs6325260
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:131871597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGTGGCTT GGGTGGCAAA AGGGGACAGG GAAGAGTCAG
  GGACCGGACC AGGCTGGCCA CGGGCCACTG AGGGAAAACT TTGAGCTGGG TAGAGGGAAA
  S
  AGGACCACCA GCACCTTGCG CCCGCATCCT GTGCCAGTAC CCGGCTCTTC GAGCCCCGCG
  CCCTGTGTCT TGCCTGTCTC CCGGACCATC TGCATCCGC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8731247	WI_WGS_2_133032361	WI	MOUSE	f	SNP				G	C
ss45306513	mCV23344122	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	G		C
ss147616106	ENSMUSSNP5732666	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G			C
ss320508274	CHEV_2_131855413	CHEVERUD	SCREENING_POP	f	SNP							C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6325260					SNP	C	C	G	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131871597 () rs orientation: forward

Symbol	Name	Function Class
Gm31179	predicted gene, 31179	774 bp upstream
Gm75461	predicted gene, 75461	309 bp upstream
Rassf2	Ras association (RalGDS/AF-6) domain family member 2	Intron
Rr367316	regulatory region 367316	201 bp downstream
Rr397324	regulatory region 397324	228 bp upstream
Rr565378	regulatory region 565378	1927 bp distal
Rr565379	regulatory region 565379	1182 bp distal
Rr565380	regulatory region 565380	within coordinates
Rr565381	regulatory region 565381	367 bp proximal
Tssr20292	transcription start site region 20292	1993 bp downstream
Tssr20293	transcription start site region 20293	1323 bp downstream
Tssr20294	transcription start site region 20294	303 bp upstream
Tssr26436	transcription start site region 26436	493 bp upstream
Tssr26437	transcription start site region 26437	472 bp upstream
Tssr26438	transcription start site region 26438	111 bp downstream
Tssr26439	transcription start site region 26439	131 bp downstream
Tssr26440	transcription start site region 26440	138 bp downstream
Tssr26441	transcription start site region 26441	147 bp downstream
Tssr26442	transcription start site region 26442	168 bp downstream