rs6325249 SNP Detail

Summary

• ID
  rs6325249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84546499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTCTGAG GGTATCAGCT
  CATAGTGAGA TCCCCAGGAT ACACCCCAGG ACCACCAGTC ACCACCTGCC CTACTTACCT
  TATCTCACCA AGCCAGGGTC CCAGAGCAAG ATATTTTGAG AAGGAAGGGC CTAGAAAACC
  TAGCCAGATC AATCAAGAAG AGCTGTTATG GGTGCAGCCC AGGACTCCAG CCTTCCAAAC
  Y
  ACCCCTATTC CCTCCCAGGT TAGACAGCAC CCTGTCCACA CAGCCAGAAT GAAGAGCTAG
  GAGGCCCAGG AGATAGCAGA GCCAGTGCAA GGTGGGCCAG CTCAGCCTCT TCTGGGGGAC
  ATGGAGTTGG AGGGGAGAAA GCTATGGGAA GAAAGGCCCC AGACTGCTCA TTATTGTCCC
  AAGACCAGAG CCTAGAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8731236	WI_WGS_6_85467747	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6325249					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84546499 () rs orientation: forward

Symbol	Name	Function Class
Cyp26b1	cytochrome P450, family 26, subfamily b, polypeptide 1	1897 bp downstream
Rr633063	regulatory region 633063	1404 bp distal
Rr633064	regulatory region 633064	317 bp proximal
Rr633065	regulatory region 633065	1227 bp proximal