rs6324406 SNP Detail

Summary

• ID
  rs6324406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:6821274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTATGAGG TGAGGATGGT
  GGGACTGACC TTGGTAAACA GTGATTTGAT TCAAATAAAG AATGTGGTTG AGAAGAAACA
  AGACCCAAAA GTCTTAAAGA AAACAAAGGT GAGGCCCTGT GAGCTGACCA GAACCTCAGC
  TGTACCCACA AATTACCTTA AGTCTGCCAC AGAAAATGAG ATGATTCTGC TAGCGGTACA
  Y
  ACAGATTTAA GGAAAACTGA AATATCTTTG ACCAGAACTA AAATATAAAC TCTAGGATGA
  TATCCTGATG GAGTCTTCTC CAGAAGGAGC TGGCAGTCAG GCCTGCCATA CACAGCAGCC
  ACACAAGGTA TTTTTCTGAA CAAATGTATG AGTGTTTAGC ATTTGTTGTA ATACAACTGA
  GTGACTACAA CTCCAATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8730393	WI_WGS_2_6824525	WI	MOUSE	f	SNP							C		T
ss37317124	NES08819029	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6324406					SNP	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37317124	NES08819029	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6821274 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Celf2	CUGBP, Elav-like family member 2			Intron
				Noncoding-Transcript-Variant
Rr372727	regulatory region 372727			1364 bp upstream