rs6324186 SNP Detail

Summary

• ID
  rs6324186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114817127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGTAGC ACTTTGGCAT
  AGCAGGGGTA GTTGGTGTTG CAGGCCACAC ACAAGCCTGG GGAGAAAACC CCGGAATGAA
  CTTTGGAGGC TGCGGTTACC AGCTTCCCCT CTGTAACATG GGGATACTGG TCAACATGTC
  GGCCTGACAT GCTTGCTGGA AGACAGTCCT TACAGACCAC GGGCTCTGCT GTCTCGGGTG
  Y
  GACTCACGTG AGAACTGTGG AGTGTGAAGC AGCAACCAGC TGCCTTAGCT GCCTGCACCT
  TCCTCCAGGA GAAGAATGCT TAGTCCACAG GCTGGACAAG CTAGATGGTG CCAGAAACCA
  GAGGAAACAG GGTGTGGCTG GGACAGAATG GGAAAGGGTG GCAAAATGTC ACAAAGGGTG
  ACTCATCAAG AAGTTATAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8730173	WI_WGS_6_115621459	WI	MOUSE	f	SNP						C	T
ss48052922	NES11876019	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C			C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6324186					SNP	C	C	T	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48052922	NES11876019	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114817127 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm67840	predicted gene, 67840			within coordinates
Rr636840	regulatory region 636840			905 bp distal
Rr636841	regulatory region 636841			113 bp proximal