rs6323807 SNP Detail

Summary

• ID
  rs6323807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:6821157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACTGGAT GTGGGCAATG
  GGAACCAAAC TCAGATCTGC ACAGGCTGTA AACGCTGCTG ACTACTGAGC AAGACCCTTT
  CTCTGCTACA TGCAAACAAA ACATAATCCA TCATACTCAT TATGAGGTGA GGATGGTGGG
  ACTGACCTTG GTAAACAGTG ATTTGATTCA AATAAAGAAT GTGGTTGAGA AGAAACAAGA
  Y
  CCAAAAGTCT TAAAGAAAAC AAAGGTGAGG CCCTGTGAGC TGACCAGAAC CTCAGCTGTA
  CCCACAAATT ACCTTAAGTC TGCCACAGAA AATGAGATGA TTCTGCTAGC GGTACACACA
  GATTTAAGGA AAACTGAAAT ATCTTTGACC AGAACTAAAA TATAAACTCT AGGATGATAT
  CCTGATGGAG TCTTCTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8729793	WI_WGS_2_6824408	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6323807					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6821157 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Celf2	CUGBP, Elav-like family member 2			Intron
				Noncoding-Transcript-Variant
Rr372727	regulatory region 372727			1481 bp upstream