rs6322830 SNP Detail

Summary

• ID
  rs6322830
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:6821041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTTTAT TTATTTTATT
  TGCTTGTGTG TGCACATACG TTAAGTGCGT GCACATGTTC TCAGAAGGTT GAAACAGGGG
  ATCAGATGCC TGGAGCCGGA GCTTTAGGTG GTATAAGCCA CTGGATGTGG GCAATGGGAA
  CCAAACTCAG ATCTGCACAG GCTGTAAACG CTGCTGACTA CTGAGCAAGA CCCTTTCTCT
  R
  CTACATGCAA ACAAAACATA ATCCATCATA CTCATTATGA GGTGAGGATG GTGGGACTGA
  CCTTGGTAAA CAGTGATTTG ATTCAAATAA AGAATGTGGT TGAGAAGAAA CAAGACCCAA
  AAGTCTTAAA GAAAACAAAG GTGAGGCCCT GTGAGCTGAC CAGAACCTCA GCTGTACCCA
  CAAATTACCT TAAGTCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8728814	WI_WGS_2_6824292	WI	MOUSE	f	SNP							G		A
ss37317128	NES08819025	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A		G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6322830					SNP	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37317128	NES08819025	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6821041 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Celf2	CUGBP, Elav-like family member 2			Intron
				Noncoding-Transcript-Variant
Rr372727	regulatory region 372727			1597 bp upstream