rs6321660 SNP Detail

Summary

• ID
  rs6321660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135001839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTACTAG GGTCAAAGGT
  GTCCACCACT GCAACCAACA ATCACCGTAT TTTTTTTTTT TTTTTTTTTT TGAGCCAGGG
  TTTCTCTATA TACCCCTGGC TATCCTGGAA CTCAATCGGT AGACCAGGCT GGACTGGAAC
  TCAGAAATCC ACCTGCCTCT GCCTCACAAA TGCTGGGATT TAAAAGCATT GTGCTACAAC
  Y
  GCCCAGCACA GTAAAGTTTT AGTAGGTCAG CTGGAAGACT GTATGCCTAG CAGGCTCAAA
  GCCCTGGACT CAGTTCTCAG CACTGCCTAA CTGAGTGTGG TGCCCCATGC CTGTCATCCC
  TGCACTCCAA AAGGGCAGGC AGGAAGATTA GGAGTTTAGG GTCATCCTTG GCTATAAAAT
  GAGTTTGAAG CTAGCCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8727644	WI_WGS_4_132858100	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6321660					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135001839 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	1768 bp upstream
Cpgi15068	CpG island 15068	905 bp distal
Rr398589	regulatory region 398589	1337 bp downstream
Rr601975	regulatory region 601975	1725 bp distal
Rr601979	regulatory region 601979	1715 bp distal
Rr601980	regulatory region 601980	1224 bp distal
Rr601981	regulatory region 601981	1399 bp distal
Rr601982	regulatory region 601982	16 bp proximal
Tssr43973	transcription start site region 43973	1811 bp upstream
Tssr43974	transcription start site region 43974	1781 bp upstream
Tssr43975	transcription start site region 43975	1755 bp upstream
Tssr43976	transcription start site region 43976	1736 bp upstream
Tssr43977	transcription start site region 43977	1709 bp upstream