rs6321115 SNP Detail

Summary

• ID
  rs6321115
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135001752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAC CCCTGGCTAT CCTGGAACTC
  R
  ATCGGTAGAC CAGGCTGGAC TGGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8727097	WI_WGS_4_132858013	WI	MOUSE	f	SNP		A	G
ss147543339	ENSMUSSNP5630591	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			A
ss321351519	CHEV_4_134830356	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6321115					SNP	G	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135001752 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	1681 bp upstream
Cpgi15068	CpG island 15068	818 bp distal
Rr398589	regulatory region 398589	1250 bp downstream
Rr601975	regulatory region 601975	1638 bp distal
Rr601978	regulatory region 601978	1971 bp distal
Rr601979	regulatory region 601979	1628 bp distal
Rr601980	regulatory region 601980	1137 bp distal
Rr601981	regulatory region 601981	1312 bp distal
Rr601982	regulatory region 601982	103 bp proximal
Tssr43973	transcription start site region 43973	1724 bp upstream
Tssr43974	transcription start site region 43974	1694 bp upstream
Tssr43975	transcription start site region 43975	1668 bp upstream
Tssr43976	transcription start site region 43976	1649 bp upstream
Tssr43977	transcription start site region 43977	1622 bp upstream