rs6320689 SNP Detail

Summary

• ID
  rs6320689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66848349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAAATAAT ACTTAAGCTG
  TCACCATTTT GCACATATTA TTGTGAACTT ATGGTCACAT GGCATTTCAC ATAAGCCTGT
  AGCTCACGTA CAGAAATACT TGTACTATAG TCTTTACTTC TAGGAGGTTA ACATGTCACA
  TTCACATGGA AGCAAGAAAA CCTTTTGGTG TAGTTACAAA AAGAACTTTC CATGTACTAT
  R
  GTGAGGGCTT CAGAAAATTA ATGACGTTTT TCCCTTCACA TCCAAAATAC ATGTTGAATA
  ATGCAGATGA ATCTAATACG TCAAACAACA GTTAGACTCT AACTCTAACT CCATTTACAT
  GGCAAGACCA GGATTTCACG TGCAGTTGAA CATATTTAAT GTTTGCAAAC AAATTTTTAC
  AACAAAATTC ACATAGGATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8726671	WI_WGS_3_67543609	WI	MOUSE	f	SNP							A		G
ss50972586	NES13935063	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6320689					SNP	A	A	A	A	A	A	A	G	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50972586	NES13935063	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66848349 () rs orientation: forward

Symbol	Name	Function Class
Rr61	regulatory region 61	899 bp distal
Rr366707	regulatory region 366707	930 bp downstream
Rr577871	regulatory region 577871	972 bp distal