rs6320225 SNP Detail

Summary

• ID
  rs6320225
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148940346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AAAGATAGGT
  GGTAAGGATA GCCCTAAGGT GTAGCTCCGG CTGCTGTGCC TCCCCAGGGG CACAAGCCTC
  ACATTCCACA CCCTTCCCCC ACTCCGGTAC GCCCTCCCCT TGTCCTTGAC AGAGGGCACT
  GTATGTTCAT GCTAGGCATG GCCAGCAATC CCTGAGCCAG TGGGCGATGT GCCCAGCAGT
  GATAATCATT GCAGATAAGC TTCTGTGGTG CCCCCTGCCC AAGAGAGAGC AGGAGCCACC
  Y
  AGGATGCCTC AATGGTGCAA CTCTTCCTGG CCTGTAAGTT TGATGCAGCC ACAAAGCTGG
  ACCCTGGCCT GGAAGCAGAA AGATCCTGAA AGATGCCCAG ATGACTTGTT CAGCGTTGTC
  TTTTTCCCGC CTCTTTCCTT CTTTGCCCCA AATCCTAAGC AAAATTAAGA AAGATTGAAA
  GATTGGAAGA CAGACAGATA GACAgaagga aagaaggaag gaaggaagga aggaaggaag
  gaaggaagga                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8726207	WI_WGS_4_144232642	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6320225					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148940346 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	Intron
Rr407036	regulatory region 407036	64 bp proximal
Rr604775	regulatory region 604775	1841 bp proximal