rs6320078 SNP Detail

Summary

• ID
  rs6320078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74534254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAACGAGA GGGGGAAGAT
  GACTGTGTAG GGAAGCGATT GTTGGTGTAA AGCCACGCAG ATTTGCACAG GTGCCACGGT
  AAGGGCACTG CCTAGTCCAG AAGATGCTAA TCCTGGACTT CTGCAGATGA CACTGCGTCT
  CTTCCTTAAC GCCCACAAAC CAGGCTTCTC TTGACTTCCG AGCCTTCTCT TTATTTCTCT
  Y
  GGGAAAATCA AGTTTATGCT AAGGCCTGCA TCCAGTCTCT GGCAGTTCTT TCCCAGTGGT
  GTGTGAGCTA AGGTCGTTAA GCACAGGACA GGGAAGGTCT GCCTGCAGCT GCCTGGAACC
  AGCACGGTCC GAAAGCGGAC TGAGGAATTC AATTTCTCCT GCCCCATCCC CCGGCCCCCG
  CCGCGCTCCA CCCGGGACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8726060	WI_WGS_2_75565065	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6320078					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74534254 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11800	CpG island 11800	96 bp proximal
Gm38462	predicted gene, 38462	within coordinates
Gm75671	predicted gene, 75671	472 bp downstream
Hoxd8	homeobox D8	719 bp upstream
Igs15	intergenic site 15	within coordinates
Rr44607	regulatory region 44607	1254 bp distal
Rr559361	regulatory region 559361	863 bp distal
Rr559362	regulatory region 559362	1498 bp distal
Rr559363	regulatory region 559363	within coordinates
Rr559364	regulatory region 559364	340 bp proximal
Rr559365	regulatory region 559365	716 bp proximal
Rr559366	regulatory region 559366	820 bp proximal
Rr559367	regulatory region 559367	837 bp proximal
Tssr18420	transcription start site region 18420	622 bp upstream
Tssr18421	transcription start site region 18421	713 bp upstream
Tssr18422	transcription start site region 18422	915 bp upstream
Tssr18423	transcription start site region 18423	951 bp upstream
Tssr18424	transcription start site region 18424	1007 bp upstream
Tssr18425	transcription start site region 18425	1136 bp upstream
Tssr18426	transcription start site region 18426	1176 bp upstream
Tssr18427	transcription start site region 18427	1235 bp upstream
Tssr18428	transcription start site region 18428	1268 bp upstream
Tssr18429	transcription start site region 18429	1430 bp upstream
Tssr18430	transcription start site region 18430	1828 bp upstream
Tssr24623	transcription start site region 24623	1905 bp downstream