rs6318267 SNP Detail

Summary

• ID
  rs6318267
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40753736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTCTTTC CAAATGAATC
  TTTCCTTGCC TCACTTCTTG TCCTGGAATC ACTGGCATTT GGGGATAGCA ATCTAGACCT
  GGATTGGAAC ACTATTAGGA GTTGAGATAA AACACAGACA CAGAGAGAAC ACACTATTGA
  GGATCTTCAG AAAACAAGTC ACTACTTTGG ATCTTTTTGC ATCTGATTAA AAAATCTCAA
  R
  ACAATTAGGC TAAAAAGCAA ACCCCTGTCG GATTATTTAC TAGCAACTAA TGTAAAGATC
  CATACCACTA CTCTTTCTTC AAAACATTTT TAGAGGAAAA TGACTTAGCC TAGGTCACTC
  ACATATGGCT CAAAATAAAT TTGTAAGATT GGTAGCCCAG GTTAGCCTGG AACTCCTTAG
  AGTCCAAGAA TGGACTGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8724249	WI_WGS_3_40784660	WI	MOUSE	f	SNP					A		G
ss60400522	NES15892865	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A		G		A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6318267					SNP	A	A	A	A	A	G	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60400522	NES15892865	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40753736 () rs orientation: forward

Symbol	Name	Function Class
4921509J17Rik	RIKEN cDNA 4921509J17 gene	837 bp downstream
Cpgi13112	CpG island 13112	426 bp proximal
Plk4	polo like kinase 4	727 bp upstream
Rr397650	regulatory region 397650	618 bp downstream
Rr575856	regulatory region 575856	290 bp distal
Rr575857	regulatory region 575857	614 bp distal
Rr575858	regulatory region 575858	228 bp proximal
Rr575859	regulatory region 575859	808 bp proximal
Tssr28972	transcription start site region 28972	712 bp upstream
Tssr28973	transcription start site region 28973	756 bp upstream
Tssr28974	transcription start site region 28974	1477 bp upstream