rs6317472 SNP Detail

Summary

• ID
  rs6317472
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:100279550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCTACT GTGCCTACAT
  TGGGGTGAAG GAAGTCACCA GACTCCTGGG CACAGATCTG GGCCTGAGCC TTCTGATCCT
  AGAAGAGGCT TCAAGATAGA ATGAGCATGA TTTTATCCAA GAGGTGTTCA TTAAGGTAGT
  GTCTTGAATG GCACTGATAC ACAACGTGCT GAGCGCTCGC TGGTGGGCAG AGTCCTGTGG
  W
  GACTATTATG GGATGAAAAA GAAGATTTGA CTAGGATACT TGATAAAAGT TTTATAGAAA
  GAACAGAGAT GTAGCTCAGT TGGTGGAGTG TCTCCCTAGC ATGCGTGAAG CCCTGAGTTT
  GATCTCTAGT TCTTCATAAA CTGGATGGGG ACTGCAAACC TACAATCCCA GAACTGAGGA
  AATAGAGGCA GGGAAATCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8723453	WI_WGS_6_101135962	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6317472					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:100279550 () rs orientation: forward

Symbol	Name	Function Class
Rr635619	regulatory region 635619	582 bp distal