rs6316796 SNP Detail

Summary

• ID
  rs6316796
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141167011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATATATA ACCATTTTCA
  GTATTTTGTT ACAGCAGTAT TAATGAAGTA AGACAATAGT GGTACTTCAA TTCAATATCC
  AGTGTGTGAG CTAAGCAAGA TAGTCCACAA AGAACTTAGT ATCCTCACTT AGTATCCACA
  TAGCAATCAG TTCATAAATG TTAGCTATTA GCAACACAGC GTTTATCTCC GCCCAGGACT
  W
  TTCTGTTAGG TAGAGTGATG AATTATCACT TCTTATTAAA GGTTGTTTAA GTCAGGTTGT
  TTTCCTTTGC TAATAGTCTT TTTTTTTTAA TATAGGTAAC AGGAAGTGCA AAGTTTCAGA
  GAGTGCATGT TTATGAGAGA CTAAGTCTCT TTCTCTGGGA TGAGGGAGAG AACTGTGATT
  GAACCAGCTG ATTCTGGACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8722773	WI_WGS_3_141970122	WI	MOUSE	f	SNP							A		T
ss61092750	NES16592329	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A		A	A	A		T	A	A	T		A
ss320992350	CHEV_3_141124214	CHEVERUD	SCREENING_POP	f	SNP													T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6316796					SNP	A	A	A	A	A	A	A	A	T	A	A	A	T	T	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092750	NES16592329	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141167011 () rs orientation: forward

Symbol	Name	Function Class
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	1175 bp proximal