rs6316778 SNP Detail

Summary

• ID
  rs6316778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51635641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGCCCAA CAGGAAGTAT
  CTGGAGTCAC AGCTAAAGAT ATCTCTGCAT GTTTGGAAAT TTATGAGCAG CTGTAAAGTG
  GCTCGATGGT GGGCAGAGGG CTGGAACAGG CTTCCTTTCA AATGAGAGAG GCCGCTGAAT
  TAAACACTCA AATACACCAG GTTCGTGGCA GGCGGAGCAC ACCTGATATG CTAAAAATAG
  Y
  CGCAGGAGAA GCTTCTGTTG CTAAAATAAT ACTGAGCCAA TAGGAGCCTT TCCTCCCTCA
  CCTAACAAGG ACAGATGAAG GGTGGAGGAT GGGTCCTGAG GTCCCATGAA GGGTGCTAGA
  AACCCCGGCC AAAGCTTAGG GAGTAATTTC CTAGATAGGG CACTTTCTAA ATACAAGCAG
  CTTCCGTAAA ATGAATCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8722755	WI_WGS_3_52179371	WI	MOUSE	f	SNP							T		C
ss60412575	NES15913901	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6316778					SNP	T	T	T	T	T	T	T	C	C	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60412575	NES15913901	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51635641 () rs orientation: forward

Symbol	Name	Function Class
Maml3	mastermind like transcriptional coactivator 3	Intron
Rr576380	regulatory region 576380	within coordinates